PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01037455001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family FAR1
Protein Properties Length: 884aa    MW: 99376 Da    PI: 6.2461
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01037455001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR152.81.3e-1665139290
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        fY++YA+++GF+++  + ++sk +g +  r+f C + g ++++ ++              C+a+lk++++ +gkw+vt++e+eH+H+++
  GSVIVT01037455001  65 FYEDYARRLGFTTKAGHCTRSKPDGMVLAREFACGRGGLKRRHADS--------------CDAMLKIELKGQGKWVVTEFEKEHTHSMM 139
                        9**************************************9998777..............**************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.3E-1365139IPR004330FAR1 DNA binding domain
PfamPF105518.2E-28277368IPR018289MULE transposase domain
PfamPF044341.2E-10555589IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.152555591IPR007527Zinc finger, SWIM-type
SMARTSM005751.6E-8566593IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 884 aa     Download sequence    Send to blast
MDVEVIDVEG GNMGSHAVAD DNGDAEPNES GEINAAENST AQDEDGVAEP HVGMEFDSED  60
AARTFYEDYA RRLGFTTKAG HCTRSKPDGM VLAREFACGR GGLKRRHADS CDAMLKIELK  120
GQGKWVVTEF EKEHTHSMMN PSKVHYLRPR RHFANTAKNM AETYQGVGIV PSGVMYVSMD  180
GNRVSIETNR GVRSAPPIES NRPNKNAGSI NYAARPSNRK RTLGRDAQNL LDYFKKMQAE  240
NPGFFYAIQL DEDNHMANVF WADARSRTAY SHFGDAVTLD TMYRVNQCRV PFAPFTGVNH  300
HGQTILFGCA LLLDDSEASF VWLFKTFLTA MNDHPPVSIT TDQDRAIQAA VAQVFPEARH  360
CISKWHVLRD GQERLAHVCH AHPNFQLELY NCINLTETIE EFESSWDSIL DKYDLRQNDW  420
LQSLYSIRMQ WVPVYFRDSF FASISPNRGF EGSFFDGYVN QQTTLPVFFR QYERALENWF  480
EKEIESDFDT ICTLPVLRTP SPMEKQAANL YTRKIFAKFQ EELVETFVYT ANRIEGDGAI  540
STYRVAKFED DHKAYIVSLN IPEMTASCSC QMFEYSGILC RHVLTVFTVT NVLTLPSHYI  600
LRRWTRNAKS GVGSDDRGGE LHGQESLTSR YNNLCREAIK YAEEGAIAVE MYNAAMVALK  660
EGGKKVAVMK KNVAKVAPPS TQVSGIGYDD KKTATLASDM TPLLWPRQDE VIRRFNLNDA  720
GVPAQPVADL NLPRMAPVSL HHDDGPPENM VVLPCLKSMT WVMENKNSTP GNRVAVINLK  780
LQDYSKTPSG ESEVKFQLSR VTLEPMLRSM AYINEQLSTP ANRVAVINLK LQDTETTSGE  840
SEVKFQVSRD TLGAMLRSMA YIREQLSNAG EAQSETPSKK QRK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.173900.0cell culture| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4623040.0AM462304.1 Vitis vinifera contig VV78X082839.15, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002270441.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA5BK490.0A5BK49_VITVI; Putative uncharacterized protein
STRINGPOPTR_0009s16010.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3